Bill W. (“The Glass Prison” is dedicated to him in the liner notes) was one of the founding members of Alcoholics Anonymous. The Glass Prison is about steps 1-3 of the AA 12-step program. His ‘friends’ are the people who have beaten their addiction with the help of the program.
The rest of the 12 steps are continued in the songs This Dying Soul, Root of All Evil, Repentance and The Shattered Fortresss.